API for DBChIP
Differential Binding of Transcription Factor with ChIP-seq
| Global functions | |
|---|---|
| DBChIP | Man page Source code |
| DBChIP-package | Man page |
| MCS.list.merge | Source code |
| MCS.merge | Source code |
| NCIS | Source code |
| NCIS.internal | Source code |
| PHA4 | Man page |
| bin.data | Source code |
| binding.site.list | Man page |
| chip.data.list | Man page |
| combine.reps | Source code |
| comp.background.size | Source code |
| comp.bkg.size | Source code |
| conds | Man page |
| est.common.disp.by.collapse | Source code |
| est.norm.med.search | Source code |
| get.NCIS.norm.factor | Source code |
| get.binding.chr | Source code |
| get.chr | Source code |
| get.chr.len | Source code |
| get.chr.site.count | Source code |
| get.chr.unique.read.count | Source code |
| get.cluster | Source code |
| get.coverage | Source code |
| get.site.count | Man page Source code |
| get.site.count.hist | Source code |
| get.unique.read.count | Source code |
| get.unique.read.count.hist | Source code |
| input.data.list | Man page |
| load.data | Man page Source code |
| plotPeak | Man page Source code |
| read.AlignedRead | Source code |
| read.BED | Source code |
| read.MCS | Source code |
| read.MCS.list | Source code |
| read.binding.site.list | Man page Source code |
| read.data.list | Source code |
| report.peak | Man page Source code |
| single.peak | Source code |
| site.merge | Man page Source code |
| test.diff.binding | Man page Source code |
| test.diff.binding.2sample | Source code |
| test.diff.binding.DESeq | Source code |
| test.diff.binding.edgeR | Source code |
| unlist.data.frame | Source code |
