API for DEGreport
Report of DEG analysis
| Global functions | |
|---|---|
| .calccompletecorandplot | Source code |
| .correct_fdr | Source code |
| .createComb | Source code |
| .effect_size | Source code |
| .filterTable | Source code |
| .generate_scatter_plot | Source code |
| .get_contrast_name | Source code |
| .get_counts | Source code |
| .get_meta | Source code |
| .getfactorcontassociationstatistics | Source code |
| .guessComb | Source code |
| .guessResults | Source code |
| .guessShrunken | Source code |
| .logger | Source code |
| .merge_results | Source code |
| .model | Source code |
| .normalizeNames | Source code |
| .numeric_effect_size | Source code |
| .plot_benchmarking | Source code |
| .plot_benchmarking_curve | Source code |
| .plot_correlation | Source code |
| .plot_raw | Source code |
| .plot_shrunken | Source code |
| .process | Source code |
| .reduce_covariates | Source code |
| .runpca | Source code |
| .summarise_res | Source code |
| .summary | Source code |
| .supported | Source code |
| .validate | Source code |
| DEGSet | Man page Source code |
| DEGSet-class | Man page |
| DEGreport | Man page |
| DEGreport-package | Man page |
| as.DEGSet | Man page |
| as.DEGSet,DESeqResults-method | Man page |
| as.DEGSet,TopTags-method | Man page |
| as.DEGSet,data.frame-method | Man page |
| createReport | Man page Source code |
| deg | Man page |
| deg,DEGSet-method | Man page |
| degBI | Source code |
| degBIcmd | Source code |
| degCheckFactors | Man page Source code |
| degClean | Source code |
| degColors | Man page Source code |
| degComb | Source code |
| degComps | Man page Source code |
| degCorCov | Man page |
| degCorrect | Man page |
| degCorrect,DEGSet-method | Man page |
| degCovariates | Man page Source code |
| degDefault | Man page |
| degDefault,DEGSet-method | Man page |
| degFC | Source code |
| degFilter | Man page Source code |
| degMA | Man page Source code |
| degMB | Man page Source code |
| degMDS | Man page |
| degMV | Man page Source code |
| degMean | Man page Source code |
| degMerge | Man page |
| degNcomb | Source code |
| degObj | Man page Source code |
| degPCA | Man page |
| degPR | Source code |
| degPatterns | Man page |
| degPlot | Man page Source code |
| degPlotCluster | Man page Source code |
| degPlotWide | Man page Source code |
| degQC | Man page Source code |
| degRank | Source code |
| degResults | Man page |
| degSignature | Man page Source code |
| degSummary | Man page Source code |
| degVB | Man page Source code |
| degVar | Man page Source code |
| degVolcano | Man page Source code |
| figurebyexp | Source code |
| figurebyvar | Source code |
| figurepvaluebyvarexp | Source code |
| fmt | Source code |
| geneInfo | Man page |
| geom_cor | Man page Source code |
| humanGender | Man page |
| significants | Man page |
| significants,DEGSet-method | Man page |
| significants,DESeqResults-method | Man page |
| significants,TopTags-method | Man page |
| significants,list-method | Man page |
