| createReport | Create report of RNAseq DEG anlaysis |
| deg | Method to get all table stored for an specific comparison |
| degCheckFactors | Distribution of gene ratios used to calculate Size Factors. |
| degColors | Make nice colors for metadata |
| degComps | Automatize the use of 'results()' for multiple comparisons |
| degCorCov | Calculate the correlation relationshipt among all covariates... |
| degCovariates | Find correlation between pcs and covariates |
| degDefault | Method to get the default table to use. |
| degFilter | Filter genes by group |
| degMA | MA-plot from base means and log fold changes |
| degMB | Distribution of expression of DE genes compared to the... |
| degMDS | Plot MDS from normalized count data |
| degMean | Distribution of pvalues by expression range |
| degMerge | Integrate data comming from degPattern into one data object |
| degMV | Correlation of the standard desviation and the mean of the... |
| degObj | Create a deg object that can be used to plot expression... |
| degPatterns | Make groups of genes using expression profile. |
| degPCA | smart PCA from count matrix data |
| degPlot | Plot top genes allowing more variables to color and shape... |
| degPlotCluster | Plot clusters from degPattern function output |
| degPlotWide | Plot selected genes on a wide format |
| degQC | Plot main figures showing p-values distribution and... |
| DEGreport-deprecated | Deprecated functions in package DEGreport |
| degResults | Complete report from DESeq2 analysis |
| DEGSet | DEGSet |
| degSignature | Plot gene signature for each group and signature |
| degSummary | Print Summary Statistics of Alpha Level Cutoffs |
| degVar | Distribution of pvalues by standard desviation range |
| degVB | Distribution of the standard desviation of DE genes compared... |
| degVolcano | Create volcano plot from log2FC and adjusted pvalues data... |
| geneInfo | data.frame with chromose information for each gene |
| geom_cor | Add correlation and p-value to a ggplot2 plot |
| humanGender | DGEList object for DE genes betwen Male and Females |
| significants | Method to get the significant genes |
