API for DEScan2
Differential Enrichment Scan 2
| Global functions | |
|---|---|
| .convertSallToGrl | Source code |
| .loadPeaks | Source code |
| DEScan2 | Man page |
| DEScan2-package | Man page |
| RleListToRleMatrix | Man page Source code |
| binToChrCoordMatRowNames | Man page Source code |
| binnedCovOnly | Man page Source code |
| binnedCoverage | Man page Source code |
| c_get_disjoint_max_win | Man page Source code |
| computeCoverageMovingWindowOnChr | Man page Source code |
| computeLambdaOnChr | Man page Source code |
| computeZ | Man page Source code |
| constructBedRanges | Man page Source code |
| countFinalRegions | Man page Source code |
| createGranges | Man page Source code |
| cutGRangesPerChromosome | Man page Source code |
| divideEachSampleByChromosomes | Man page Source code |
| evenRunMean | Man page Source code |
| evenRunSum | Man page Source code |
| finalRegions | Man page Source code |
| findOverlapsOverSamples | Man page Source code |
| findPeaks | Man page Source code |
| fromSamplesToChrsGRangesList | Man page Source code |
| generateDFofSamplesPerChromosomes | Man page Source code |
| get_disjoint_max_win | Man page Source code |
| giveUniqueNamesToPeaksOverSamples | Man page Source code |
| initMergedPeaksNames | Man page Source code |
| keepRelevantChrs | Man page Source code |
| rcpparma_get_disjoint_max_win | Man page Source code |
| readBamAsBed | Man page Source code |
| readBedFile | Man page Source code |
| readFilesAsGRangesList | Man page Source code |
| saveGRangesAsBed | Man page Source code |
| saveGRangesAsTsv | Man page Source code |
| setGRGenomeInfo | Man page Source code |
