cutGRangesPerChromosome: cutGRangesPerChromosome

In DEScan2: Differential Enrichment Scan 2

Description

takes in input a GRanges object, producing a LIST of GRanges, one for each chromosome.

Usage

cutGRangesPerChromosome(GRanges)

Arguments

GRanges

a GRanges object.

Value

a named list of GRanges, one for each chromosome.

Examples

library("GenomicRanges")
gr <- GRanges(
        seqnames=Rle(c("chr1", "chr2", "chr1", "chr3"), c(1, 3, 2, 4)),
        ranges=IRanges(1:10, end=10),
        strand=Rle(strand(c("-", "+", "*", "+", "-")), c(1, 2, 2, 3, 2)),
        seqlengths=c(chr1=11, chr2=12, chr3=13))
(grchrlist <- cutGRangesPerChromosome(gr))

DEScan2 documentation built on Nov. 8, 2020, 5:01 p.m.