readBedFile: readBedFile
In DEScan2: Differential Enrichment Scan 2
Description
Usage
Arguments
Value
Examples
Description
read a bed file into a GenomicRanges like format.
forcing UCSC format for chromosomes names.
Usage
1
readBedFile(filename, arePeaks = FALSE)
Arguments
filename
the bed filename.
arePeaks
a flag indicating if the the bed file represents peaks.
Value
GRanges object
Examples
1
2
3
bedFile <- list.files(system.file("extdata/bed",package="DEScan2"),
full.names=TRUE)
gr <- readBedFile(bedFile)
DEScan2 documentation built on Nov. 8, 2020, 5:01 p.m.
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Description Usage Arguments Value Examples
Description
read a bed file into a GenomicRanges like format. forcing UCSC format for chromosomes names.
Usage
1 | readBedFile(filename, arePeaks = FALSE)
|
Arguments
filename |
the bed filename. |
arePeaks |
a flag indicating if the the bed file represents peaks. |
Value
GRanges object
Examples
1 2 3 | bedFile <- list.files(system.file("extdata/bed",package="DEScan2"),
full.names=TRUE)
gr <- readBedFile(bedFile)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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