computeCoverageMovingWindowOnChr: computeCoverageMovingWindowOnChr
In DEScan2: Differential Enrichment Scan 2
Description
Usage
Arguments
Value
View source: R/peakCallFunctions.R
Description
computes the coverage on a chromosomewith a
set of moving windows of dimensions minWinWidth:maxWinWidth
Usage
1
2
computeCoverageMovingWindowOnChr(chrBedGRanges, minWinWidth = 50,
maxWinWidth = 1000, binWidth = 50, verbose = TRUE)
Arguments
chrBedGRanges
a GRanges to compute the coverage
minWinWidth
the minimum width of the window to use for the coverage
maxWinWidth
the maximum width of the window to use for the coverage
binWidth
the dimension of the bin in base number
Value
RleList where each element is a window within the Rle of its coverage
DEScan2 documentation built on Nov. 8, 2020, 5:01 p.m.
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Description Usage Arguments Value
View source: R/peakCallFunctions.R
Description
computes the coverage on a chromosomewith a set of moving windows of dimensions minWinWidth:maxWinWidth
Usage
1 2 | computeCoverageMovingWindowOnChr(chrBedGRanges, minWinWidth = 50,
maxWinWidth = 1000, binWidth = 50, verbose = TRUE)
|
Arguments
chrBedGRanges |
a GRanges to compute the coverage |
minWinWidth |
the minimum width of the window to use for the coverage |
maxWinWidth |
the maximum width of the window to use for the coverage |
binWidth |
the dimension of the bin in base number |
Value
RleList where each element is a window within the Rle of its coverage
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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