Files in DEScan2
Differential Enrichment Scan 2
NAMESPACE
DESCRIPTION
build/vignette.rds
src/rcpparma_max_win.cpp
src/Makevars.win
src/RcppExports.cpp
src/Makevars
R/RcppExports.R
R/utilities.R
R/finalRegionFunctions.R
R/countMatrixFunctions.R
R/peakCallFunctions.R
R/DEScan2.R
vignettes/DEScan2.Rmd
man/binnedCovOnly.Rd
man/computeCoverageMovingWindowOnChr.Rd
man/c_get_disjoint_max_win.Rd
man/constructBedRanges.Rd
man/get_disjoint_max_win.Rd
man/cutGRangesPerChromosome.Rd
man/initMergedPeaksNames.Rd
man/computeLambdaOnChr.Rd
man/generateDFofSamplesPerChromosomes.Rd
man/binnedCoverage.Rd
man/readBamAsBed.Rd
man/fromSamplesToChrsGRangesList.Rd
man/saveGRangesAsBed.Rd
man/evenRunMean.Rd
man/giveUniqueNamesToPeaksOverSamples.Rd
man/rcpparma_get_disjoint_max_win.Rd
man/createGranges.Rd
man/saveGRangesAsTsv.Rd
man/keepRelevantChrs.Rd
man/readFilesAsGRangesList.Rd
man/DEScan2.Rd
man/findOverlapsOverSamples.Rd
man/computeZ.Rd
man/finalRegions.Rd
man/readBedFile.Rd
man/setGRGenomeInfo.Rd
man/countFinalRegions.Rd
man/divideEachSampleByChromosomes.Rd
man/evenRunSum.Rd
man/findPeaks.Rd
man/binToChrCoordMatRowNames.Rd
man/RleListToRleMatrix.Rd
tests/testthat.R
tests/testthat/testRegions.R
tests/testthat/testPeaks.R
tests/testthat/testInputs.R
inst/NEWS
inst/doc/DEScan2.Rmd
inst/doc/DEScan2.html
inst/doc/DEScan2.R
inst/extdata/bam/or_FC6.bam
inst/extdata/bam/or_HC6.bam
inst/extdata/bam/or_FC4.bam.bai
inst/extdata/bam/or_HC4.bam
inst/extdata/bam/or_FC6.bam.bai
inst/extdata/bam/or_FC1.bam
inst/extdata/bam/or_HC9.bam.bai
inst/extdata/bam/or_HC6.bam.bai
inst/extdata/bam/or_FC4.bam
inst/extdata/bam/or_HC1.bam.bai
inst/extdata/bam/or_HC4.bam.bai
inst/extdata/bam/or_FC9.bam
inst/extdata/bam/or_FC9.bam.bai
inst/extdata/bam/or_HC1.bam
inst/extdata/bam/or_FC1.bam.bai
inst/extdata/bam/or_HC9.bam
inst/extdata/regions/regions.rds
inst/extdata/bed/FC1.bam.bed.zip
inst/extdata/peaks/bed/H_FC9.bed.zip
inst/extdata/peaks/bed/H_HC4.bed.zip
inst/extdata/peaks/bed/H_HC9.bed.zip
inst/extdata/peaks/bed/H_FC4.bed.zip
inst/extdata/peaks/bed/H_FC1.bed.zip
inst/extdata/peaks/bed/H_HC6.bed.zip
inst/extdata/peaks/bed/H_FC6.bed.zip
inst/extdata/peaks/RData/peaksGRL_all_files.rds
inst/extdata/tests/counts/finalRegionsSE.rds
inst/extdata/tests/z/z_matrix.rds
inst/extdata/tests/inputdata/FCGRL.rds
inst/extdata/tests/inputdata/bam/FC1.bam
inst/extdata/tests/inputdata/bam/FC1.bam.bai
inst/extdata/tests/inputdata/bed/FC1.bam.bed.zip
inst/extdata/tests/peaks/FC1_GRL.rds
inst/extdata/tests/peaks/peaks_all_samples.rds
