Man pages for DEScan2
Differential Enrichment Scan 2
| binnedCoverage | binnedCoverage |
| binnedCovOnly | binnedCovOnly |
| binToChrCoordMatRowNames | binToChrCoordMatRowNames |
| c_get_disjoint_max_win | c_get_disjoint_max_win |
| computeCoverageMovingWindowOnChr | computeCoverageMovingWindowOnChr |
| computeLambdaOnChr | computeLambdaOnChr |
| computeZ | computeZ |
| constructBedRanges | constructBedRanges |
| countFinalRegions | countFinalRegions |
| createGranges | createGranges |
| cutGRangesPerChromosome | cutGRangesPerChromosome |
| DEScan2 | DEScan2 |
| divideEachSampleByChromosomes | divideEachSampleByChromosomes |
| evenRunMean | evenRunMean |
| evenRunSum | evenRunSum |
| finalRegions | finalRegions |
| findOverlapsOverSamples | findOverlapsOverSamples |
| findPeaks | findPeaks |
| fromSamplesToChrsGRangesList | fromSamplesToChrsGRangesList |
| generateDFofSamplesPerChromosomes | generateDFofSamplesPerChromosomes |
| get_disjoint_max_win | get_disjoint_max_win |
| giveUniqueNamesToPeaksOverSamples | giveUniqueNamesToPeaksOverSamples |
| initMergedPeaksNames | initMergedPeaksNames |
| keepRelevantChrs | keepRelevantChrs |
| rcpparma_get_disjoint_max_win | rcpparma_get_disjoint_max_win Computes the disjoint max_win... |
| readBamAsBed | readBamAsBed |
| readBedFile | readBedFile |
| readFilesAsGRangesList | readFilesAsGRangesList |
| RleListToRleMatrix | RleListToRleMatrix |
| saveGRangesAsBed | saveGRangesAsBed |
| saveGRangesAsTsv | saveGRangesAsTsv |
| setGRGenomeInfo | setGRGenomeInfo given a genome code (i.e.... |
