calculateFuzzyPatterns: Calculates a Fuzzy Pattern for each category of the samples

Description Usage Arguments Value Author(s) References

View source: R/DFP.R


Calculates a Fuzzy Pattern for each category. To do this, a given percentage of the samples belonging to a category must have the same label (‘Low’, ‘Medium’ or ‘High’).


calculateFuzzyPatterns(rmadataset, dvs, piVal = 0.9, overlapping = 2)



ExpressionSet with numeric values containing gene expression values (rows) of samples belonging to different categories (columns).
The ExpressionSet also contains an AnnotatedDataFrame with metadata regarding the classes to which each sample belongs.


Matrix containing discrete values according to the overlapping parameter after discretizing the gene expression values.
Includes an attribute types which determines the category of each sample.


Controls the degree of exigency for selecting a gene as a member of a Fuzzy Pattern.
Default value = 0.9. Range[0,1].


Modifies the number of membership functions used in the discretization process.
Possible values:

  1. ‘Low’, ‘Medium’, ‘High’.

  2. ‘Low’, ‘Low-Medium’, ‘Medium’, ‘Medium-High’, ‘High’.

  3. ‘Low’, ‘Low-Medium’, ‘Low-Medium-High’, ‘Medium’, ‘Medium-High’, ‘High’.

Default value = 2.


Genes belonging to each Fuzzy Patterns. There are one FP for each class.
Includes an attribute ifs with the Impact Factor for each category.


Rodrigo Alvarez-Gonzalez
Daniel Glez-Pena
Fernando Diaz
Florentino Fdez-Riverola
Maintainer: Rodrigo Alvarez-Gonzalez <[email protected]>


F. Diaz; F. Fdez-Riverola; D. Glez-Pena; J.M. Corchado. Using Fuzzy Patterns for Gene Selection and Data Reduction on Microarray Data. 7th International Conference on Intelligent Data Engineering and Automated Learning: IDEAL 2006, (2006) pp. 1095-1102

DFP documentation built on Nov. 17, 2017, 9:37 a.m.