oswFiles_DIAlignR: Analytes information from osw files
In DIAlignR: Dynamic Programming Based Alignment of MS2 Chromatograms
Description
Usage
Format
Source
Description
analytes info from three SWATH runs:
run0 : hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt.chrom.mzML
run1 : hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
run2 : hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
Usage
1
Format
A list of three elements where each element consists of a dataframe:
- transition_group_id
ID of each peptide
- RT
Retention time, in sec
- intensity
Inensity of associated feature
- leftWidth
Left width of the peak, in sec
- rightWidth
Right width of the peak, in sec
- peak_group_rank
Ranking of associated feature
- m_score
qvalue of associated feature
Source
Raw files are downloaded from Peptide Atlas.
File test_GenerateData.R has source code
to generate the example data.
DIAlignR documentation built on Nov. 8, 2020, 8:22 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format Source
Description
analytes info from three SWATH runs:
run0 : hroest_K120808_Strep10%PlasmaBiolRepl1_R03_SW_filt.chrom.mzML
run1 : hroest_K120809_Strep0%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
run2 : hroest_K120809_Strep10%PlasmaBiolRepl2_R04_SW_filt.chrom.mzML
Usage
1 |
Format
A list of three elements where each element consists of a dataframe:
- transition_group_id
ID of each peptide
- RT
Retention time, in sec
- intensity
Inensity of associated feature
- leftWidth
Left width of the peak, in sec
- rightWidth
Right width of the peak, in sec
- peak_group_rank
Ranking of associated feature
- m_score
qvalue of associated feature
Source
Raw files are downloaded from Peptide Atlas. File test_GenerateData.R has source code to generate the example data.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.