DMCHMM: Differentially Methylated CpG using Hidden Markov Model

A pipeline for identifying differentially methylated CpG sites using Hidden Markov Model in bisulfite sequencing data.

Package overview DMCHMM: Differentially Methylated CpG using Hidden Markov Model

Vignettes Man pages API and functions Files

Package details
Author	Farhad Shokoohi [aut, cre] (<https://orcid.org/0000-0002-6224-2609>)
Bioconductor views	Coverage DifferentialMethylation HiddenMarkovModel Sequencing
Maintainer	Farhad Shokoohi <shokoohi@icloud.com>
License	GPL-3
Version	1.12.0
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("DMCHMM")`