inst/NEWS.md

In DMCHMM: Differentially Methylated CpG using Hidden Markov Model

Version 1.11.1

CHANGES

• Parallel reading is added to readBismark-method.

BUG FIX

• Some bugs are fixed in methHMMCMC-method to avoid creating infinity.

Version 1.9.2

CHANGES SINCE LAST RELEASE

• Made compatible with R 4 following changes in some codes in R.
• Citation is updated.

Version 1.3.1

CHANGES AND BUG FIX

• A new citation is added.
• Several bugs are fixed.

Version 0.99.17

CHANGES SINCE LAST RELEASE

• A new function, compareDMCs() is added for plotting DMCs and average predicted methylation for for group comparison.
• The manhattanDMCs() function is modified to plot regions of interests.

Version 0.99.16

CHANGES SINCE LAST RELEASE

• The function findDMCs() is fixed for memory management.
• The function methEM() is fixed for creating NaN in computing binomial probabilities.

Version 0.99.15

CHANGES SINCE LAST RELEASE

• An option is added to findDMC that lets the user enters a function to calculate weights for GLM using the variances obtianed from MCMC.

Version 0.99.10 - 0.99.14

CHANGES SINCE LAST RELEASE

• Several issues are fixed.
• Some modification are done to expedite the speed of processes.
• Instead of the parallel package, the BioParallel package is used.

Version 0.99.9

CHANGES SINCE LAST RELEASE

• Some parameters in examples are changed to make the running time faster.
• The BSData-method is changed to cBSData-method.
• The BSDMCs-method is changed to cBSDMCs-method.

Version 0.99.0

CHANGES SINCE LAST RELEASE

• We have refined some of the codes to speed up the running the package.

DMCHMM documentation built on Nov. 8, 2020, 8:20 p.m.