sdp.plot: Plot association mapping results.
In DOQTL: Genotyping and QTL Mapping in DO Mice

Description Usage Arguments Details Value Author(s) See Also Examples

Plot the founder strain distribution patterns (SDP) of the SNPs in results.

1	sdp.plot(results, ...)

`results`	Data.frame containing output from `assoc.map`.
`...`	Additional arguments passed to plot.

Given the output from assoc.map, plot the SDPs for the SNPs in results. This will show which strains have the minor allele at each SNP in results. You may also add this plot to the top of assoc.plot.

Produces a plot. There is no return value.

Daniel Gatti

assoc.map, assoc.plot

  ## Not run:  
    results = assoc.map(pheno = pheno, pheno.col = 1, probs = probs, K = K, addcovar = addcovar, 
	snps = snps, chr = 1, start = 40, end = 45)
    sdp.plot(results[results[,12] > 3,])
  
## End(Not run)