deepblue_enrich_regions_fast: enrich_regions_fast
In DeepBlueR: DeepBlueR

Description Usage Arguments Value See Also

Enrich the regions based on regions bitmap signature comparison.

deepblue_enrich_regions_fast(query_id = NULL, genome = NULL,
  epigenetic_mark = NULL, biosource = NULL, sample = NULL,
  technique = NULL, project = NULL,
  user_key = deepblue_options("user_key"))

`query_id`	- A string (Query ID)
`genome`	- A string or a vector of string (the target genome)
`epigenetic_mark`	- A string or a vector of string (name(s) of selected epigenetic mark(s))
`biosource`	- A string or a vector of string (name(s) of selected biosource(s))
`sample`	- A string or a vector of string (id(s) of selected sample(s))
`technique`	- A string or a vector of string (name(s) of selected technique(s))
`project`	- A string or a vector of string (name(s) of selected projects)
`user_key`	- A string (users token key)

request_id - A string (Request ID - Use it to retrieve the result with info() and get_request_data(). The result is a list containing the datasets that overlap with the query_id regions.)

Other Enrich the genome regions: deepblue_enrich_regions_go_terms, deepblue_enrich_regions_overlap

DeepBlueR documentation built on Nov. 8, 2020, 6:25 p.m.