Man pages for DeepBlueR
DeepBlueR

deepblue_aggregateaggregate
deepblue_batch_export_resultsbatch_export_results
deepblue_binningbinning
deepblue_cache_statusReport on the cache size and status
deepblue_cancel_requestcancel_request
deepblue_chromosomeschromosomes
deepblue_clear_cacheClear cache
deepblue_collection_experiments_countcollection_experiments_count
deepblue_column_typesget columns
DeepBlueCommand-classDeepBlueCommand class
deepblue_commandscommands
deepblue_convert_to_dfconvert_to_df
deepblue_convert_to_grangeconvert_to_grange
deepblue_count_gene_ontology_termscount_gene_ontology_terms
deepblue_count_regionscount_regions
deepblue_coveragecoverage
deepblue_delete_request_from_cacheDelete a specific request from the cache
deepblue_diffdiff
deepblue_distinct_column_valuesdistinct_column_values
deepblue_download_request_datadeepblue_download_request_data
deepblue_download_request_data-DeepBlueCommand-methoddeepblue_download_request_data
deepblue_echoecho
deepblue_enrich_regions_fastenrich_regions_fast
deepblue_enrich_regions_go_termsenrich_regions_go_terms
deepblue_enrich_regions_overlapenrich_regions_overlap
deepblue_export_bedExport GenomicRanges result as BED file
deepblue_export_meta_dataExport meta data as tab delimited file
deepblue_export_tabExport a DeepBlue result as ordinary tab delimited file
deepblue_extendextend
deepblue_extract_idsextract_ids
deepblue_extract_namesextract_names
deepblue_faceting_experimentsfaceting_experiments
deepblue_filter_regionsfilter_regions
deepblue_find_motiffind_motif
deepblue_flankflank
deepblue_format_object_sizeFormat byte size as human readable units
deepblue_get_biosource_childrenget_biosource_children
deepblue_get_biosource_parentsget_biosource_parents
deepblue_get_biosource_relatedget_biosource_related
deepblue_get_biosource_synonymsget_biosource_synonyms
deepblue_get_dbSets up the DeepBlueR cache and returns a filehash db object
deepblue_get_experiments_by_queryget_experiments_by_query
deepblue_get_regionsget_regions
deepblue_get_request_dataget_request_data
deepblue_infoinfo
deepblue_input_regionsinput_regions
deepblue_intersectionintersection
deepblue_is_biosourceis_biosource
deepblue_liftoverLift over region results between Genome Assemblies used in...
deepblue_list_annotationslist_annotations
deepblue_list_biosourceslist_biosources
deepblue_list_cached_requestsList cached requests
deepblue_list_column_typeslist_column_types
deepblue_list_epigenetic_markslist_epigenetic_marks
deepblue_list_experimentslist_experiments
deepblue_list_expressionslist_expressions
deepblue_list_gene_modelslist_gene_models
deepblue_list_geneslist_genes
deepblue_list_genomeslist_genomes
deepblue_list_in_uselist_in_use
deepblue_list_projectslist_projects
deepblue_list_recent_experimentslist_recent_experiments
deepblue_list_requestslist_requests
deepblue_list_sampleslist_samples
deepblue_list_similar_biosourceslist_similar_biosources
deepblue_list_similar_epigenetic_markslist_similar_epigenetic_marks
deepblue_list_similar_experimentslist_similar_experiments
deepblue_list_similar_genomeslist_similar_genomes
deepblue_list_similar_projectslist_similar_projects
deepblue_list_similar_techniqueslist_similar_techniques
deepblue_list_techniqueslist_techniques
deepblue_merge_queriesmerge_queries
deepblue_meta_data_to_tableConvert XML structured meta data to table format
deepblue_name_to_idname_to_id
deepblue_optionsoptions
deepblue_overlapoverlap
deepblue_parse_gtfdeepblue_parse_gtf
deepblue_preview_experimentpreview_experiment
deepblue_query_cachequery_cache
deepblue_query_experiment_typequery_experiment_type
deepblue_reset_optionsReset DeepBlueR options
deepblue_score_matrixscore_matrix
deepblue_searchsearch
deepblue_select_annotationsselect_annotations
deepblue_select_columnselect column
deepblue_select_experimentsselect_experiments
deepblue_select_expressionsselect_expressions
deepblue_select_genesselect_genes
deepblue_select_regionsselect_regions
deepblue_switch_get_request_dataswitch_get_request_data
deepblue_tiling_regionstiling_regions
deepblue_wait_requestdeepblue_wait_request
show-DeepBlueCommand-methodshow DeepBlue command object
xml.rpcxml.rpc
DeepBlueR documentation built on Nov. 17, 2017, 10:35 a.m.