A utility command that creates a list of experiments in which a specific column is selected. Such a list is needed as input for deepblue_score_matrix.
deepblue_select_column(experiments, column, user_key = deepblue_USER_KEY)
- A data frame with experiments obtained from deepblue_list_experiments
- The name of the column that is extracted from each experiment file
- A string (users token key)
A list of experiments with the selected column
Other Utilities for information processing:
1 2 3 4 5 6 7 8 9 10
blueprint_DNA_meth <- deepblue_list_experiments( genome = "GRCh38", epigenetic_mark = "DNA Methylation", technique = "Bisulfite-Seq", project = "BLUEPRINT EPIGENOME") blueprint_DNA_meth <- blueprint_DNA_meth[grep("bs_call", deepblue_extract_names(blueprint_DNA_meth)),] exp_columns <- deepblue_select_column(blueprint_DNA_meth, "VALUE")
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