select column

Description

A utility command that creates a list of experiments in which a specific column is selected. Such a list is needed as input for deepblue_score_matrix.

Usage

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deepblue_select_column(experiments, column, user_key = deepblue_USER_KEY)

Arguments

experiments

- A data frame with experiments obtained from deepblue_list_experiments

column

- The name of the column that is extracted from each experiment file

user_key

- A string (users token key)

Value

A list of experiments with the selected column

See Also

deepblue_score_matrix

deepblue_list_experiments

Other Utilities for information processing: deepblue_diff

Examples

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blueprint_DNA_meth <- deepblue_list_experiments(
genome = "GRCh38", 
epigenetic_mark = "DNA Methylation",
technique = "Bisulfite-Seq",
project = "BLUEPRINT EPIGENOME")

blueprint_DNA_meth <- blueprint_DNA_meth[grep("bs_call", 
 deepblue_extract_names(blueprint_DNA_meth)),]
 
exp_columns <- deepblue_select_column(blueprint_DNA_meth, "VALUE")

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