deepblue_intersection: intersection
In DeepBlueR: DeepBlueR

Description Usage Arguments Value See Also Examples

Select genomic regions that intersect with at least one region of the second query. This command is a simplified version of the 'overlap' command.

1 2	deepblue_intersection(query_data_id = NULL, query_filter_id = NULL, user_key = deepblue_options("user_key"))

`query_data_id`	- A string (query data that will be filtered.)
`query_filter_id`	- A string (query containing the regions that the regions of the query_data_id must overlap.)
`user_key`	- A string (users token key)

id - A string (id of the new query)

Other Operating on the data regions: deepblue_aggregate, deepblue_binning, deepblue_count_regions, deepblue_coverage, deepblue_distinct_column_values, deepblue_extend, deepblue_filter_regions, deepblue_flank, deepblue_get_experiments_by_query, deepblue_get_regions, deepblue_input_regions, deepblue_merge_queries, deepblue_overlap, deepblue_query_cache, deepblue_query_experiment_type, deepblue_score_matrix, deepblue_select_annotations, deepblue_select_experiments, deepblue_select_regions, deepblue_tiling_regions

annotation_id = deepblue_select_annotations(
    annotation_name="CpG Islands",
    genome="hg19", chromosome="chr1")
data_id = deepblue_select_experiments(
    experiment_name="E002-H3K9ac.narrowPeak.bed")
deepblue_intersection(query_data_id = annotation_id,
    query_filter_id = data_id)