deepblue_batch_export_results: batch_export_results

In DeepBlueR: DeepBlueR

Description

Write results from DeepBlue to disk as they become available

Usage

deepblue_batch_export_results(requests, target.directory = NULL,
  suffix = "result", prefix = "DeepBlue", sleep.time = 1,
  bed.format = TRUE, user_key = deepblue_options("user_key"))

Arguments

requests	A list of request objects
target.directory	Where the results should be saved
suffix	File names suffix
prefix	File names prefix
sleep.time	How long this function will wait after the requests verification
bed.format	whether to store the results as BED files or tab delimited.
user_key	A string used to authenticate the user

Value

A list containing the requests IDs data

Examples

data_id = deepblue_select_experiments(
experiment_name="E002-H3K9ac.narrowPeak.bed", chromosome="chr1")
request_id = deepblue_get_regions(query_id =data_id,
  output_format = "CHROMOSOME,START,END")
request_data = deepblue_batch_export_results(list(request_id))

DeepBlueR documentation built on Nov. 8, 2020, 6:25 p.m.