deepblue_coverage: coverage

In DeepBlueR: DeepBlueR

Description

Send a request to count the number of regions in the result of the given query.

Usage

deepblue_coverage(query_id = NULL, genome = NULL,
  user_key = deepblue_options("user_key"))

Arguments

query_id	- A string (Query ID)
genome	- A string (Genome where the coverage will be calculated to)
user_key	- A string (users token key)

Value

request_id - A string (Request ID - Use it to retrieve the result with info() and get_request_data())

See Also

Other Operating on the data regions: deepblue_aggregate, deepblue_binning, deepblue_count_regions, deepblue_distinct_column_values, deepblue_extend, deepblue_filter_regions, deepblue_flank, deepblue_get_experiments_by_query, deepblue_get_regions, deepblue_input_regions, deepblue_intersection, deepblue_merge_queries, deepblue_overlap, deepblue_query_cache, deepblue_query_experiment_type, deepblue_score_matrix, deepblue_select_annotations, deepblue_select_experiments, deepblue_select_regions, deepblue_tiling_regions

Examples

data_id = deepblue_select_experiments(
    experiment_name="E002-H3K9ac.narrowPeak.bed")
deepblue_coverage(query_id = data_id, genome="hg19")

DeepBlueR documentation built on Nov. 8, 2020, 6:25 p.m.