deepblue_tiling_regions: tiling_regions

Description Usage Arguments Value See Also Examples

View source: R/deepblue.R

Description

Generate tiling regions across the genome chromosomes. The idea is to "bin" genomic regions systematically in order to obtain discrete regions over which one can aggregate. Using the 'score_matrix' command, these bins (tiles) can be compared directly across experiments.

Usage

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deepblue_tiling_regions(size = NULL, genome = NULL, chromosome = NULL,
  user_key = deepblue_options("user_key"))

Arguments

size

- A int (tiling size)

genome

- A string (the target genome)

chromosome

- A string or a vector of string (chromosome name(s))

user_key

- A string (users token key)

Value

id - A string (query id)

See Also

Other Operating on the data regions: deepblue_aggregate, deepblue_binning, deepblue_count_regions, deepblue_coverage, deepblue_distinct_column_values, deepblue_extend, deepblue_filter_regions, deepblue_flank, deepblue_get_experiments_by_query, deepblue_get_regions, deepblue_input_regions, deepblue_intersection, deepblue_merge_queries, deepblue_overlap, deepblue_query_cache, deepblue_query_experiment_type, deepblue_score_matrix, deepblue_select_annotations, deepblue_select_experiments, deepblue_select_regions

Examples

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deepblue_tiling_regions(
    size = 10000,
    genome = "hg19",
    chromosome = "chr1")

DeepBlueR documentation built on Nov. 17, 2017, 10:35 a.m.