deepblue_list_biosources: list_biosources
In DeepBlueR: DeepBlueR
Description
Usage
Arguments
Value
See Also
Examples
Description
List BioSources included in DeepBlue. A BioSource refers to a term describing the origin of a given sample, such as a tissue or cell line. It is possible to filter the BioSources by their extra_metadata fields content. These fields vary depending on the original data source.
Usage
1
2
deepblue_list_biosources(extra_metadata = NULL,
user_key = deepblue_options("user_key"))
Arguments
extra_metadata
- A struct (Metadata that must be matched)
user_key
- A string (users token key)
Value
biosources - A array (biosources names and IDS)
See Also
Other Inserting and listing biosources: deepblue_list_similar_biosources
Examples
1
deepblue_list_biosources(extra_metadata = list(ontology_id = "UBERON:0002485"))
DeepBlueR documentation built on Nov. 8, 2020, 6:25 p.m.
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Description Usage Arguments Value See Also Examples
Description
List BioSources included in DeepBlue. A BioSource refers to a term describing the origin of a given sample, such as a tissue or cell line. It is possible to filter the BioSources by their extra_metadata fields content. These fields vary depending on the original data source.
Usage
1 2 | deepblue_list_biosources(extra_metadata = NULL,
user_key = deepblue_options("user_key"))
|
Arguments
extra_metadata |
- A struct (Metadata that must be matched) |
user_key |
- A string (users token key) |
Value
biosources - A array (biosources names and IDS)
See Also
Other Inserting and listing biosources: deepblue_list_similar_biosources
Examples
1 | deepblue_list_biosources(extra_metadata = list(ontology_id = "UBERON:0002485"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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