deepblue_list_biosources: list_biosources

Description Usage Arguments Value See Also Examples

View source: R/deepblue.R

Description

List BioSources included in DeepBlue. A BioSource refers to a term describing the origin of a given sample, such as a tissue or cell line. It is possible to filter the BioSources by their extra_metadata fields content. These fields vary depending on the original data source.

Usage

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deepblue_list_biosources(extra_metadata = NULL,
  user_key = deepblue_options("user_key"))

Arguments

extra_metadata

- A struct (Metadata that must be matched)

user_key

- A string (users token key)

Value

biosources - A array (biosources names and IDS)

See Also

Other Inserting and listing biosources: deepblue_list_similar_biosources

Examples

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deepblue_list_biosources(extra_metadata = list(ontology_id = "UBERON:0002485"))

DeepBlueR documentation built on Nov. 8, 2020, 6:25 p.m.