deepblue_select_genes: select_genes

Description Usage Arguments Value See Also Examples

Description

Select genes (by their name or ID) as genomic regions from the specified gene model.

Usage

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deepblue_select_genes(genes = NULL, go_terms = NULL, gene_model = NULL,
  chromosome = NULL, start = NULL, end = NULL,
  user_key = deepblue_options("user_key"))

Arguments

genes

- A string or a vector of string (Name(s) or ENSEMBL ID (ENSGXXXXXXXXXXX.X ) of the gene(s).)

go_terms

- A string or a vector of string (gene ontology terms - ID or label)

gene_model

- A string (the gene model)

chromosome

- A string or a vector of string (chromosome name(s))

start

- A int (minimum start region)

end

- A int (maximum end region)

user_key

- A string (users token key)

Value

id - A string (query id)

See Also

Other Gene models and genes identifiers: deepblue_count_gene_ontology_terms, deepblue_list_gene_models, deepblue_list_genes

Examples

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genes_names =
    c('CCR1', 'CD164', 'CD1D', 'CD2', 'CD34', 'CD3G', 'CD44')
deepblue_select_genes(
    genes = genes_names,
    gene_model = "gencode v23")


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