select_expressions

Description

Select expressions (by their name or ID) as genomic regions from the specified model.

Usage

1
2
3
deepblue_select_expressions(expression_type = NULL, sample_ids = NULL,
  replicas = NULL, identifiers = NULL, projects = NULL,
  gene_model = NULL, user_key = deepblue_USER_KEY)

Arguments

expression_type

- A string (expression type (supported: 'gene'))

sample_ids

- A string or a vector of string (id(s) of selected sample(s))

replicas

- A int or a vector of int (replica(s))

identifiers

- A string or a vector of string (identifier(s) (for genes: ensembl ID or ENSB name).)

projects

- A string or a vector of string (projects(s))

gene_model

- A string (gene model name)

user_key

- A string (users token key)

Value

id - A string (query id)

See Also

Other Expression data: deepblue_list_expressions

Examples

1
2
3
4
5
6
7
genes_names =
    c('CCR1', 'CD164', 'CD1D', 'CD2', 'CD34', 'CD3G', 'CD44')
deepblue_select_expressions(
    expression_type="gene",
    sample_ids="s10205",
    identifiers = genes_names,
    gene_model = "gencode v23")

Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.