deepblue_select_expressions: select_expressions
In DeepBlueR: DeepBlueR

Description Usage Arguments Value See Also Examples

Select expressions (by their name or ID) as genomic regions from the specified model.

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deepblue_select_expressions(expression_type = NULL, sample_ids = NULL,
  replicas = NULL, identifiers = NULL, projects = NULL,
  gene_model = NULL, user_key = deepblue_options("user_key"))

`expression_type`	- A string (expression type (supported: 'gene'))
`sample_ids`	- A string or a vector of string (id(s) of selected sample(s))
`replicas`	- A int or a vector of int (replica(s))
`identifiers`	- A string or a vector of string (identifier(s) (for genes: ensembl ID or ENSB name).)
`projects`	- A string or a vector of string (projects(s))
`gene_model`	- A string (gene model name)
`user_key`	- A string (users token key)

id - A string (query id)

Other Expression data: deepblue_list_expressions

genes_names =
    c('CCR1', 'CD164', 'CD1D', 'CD2', 'CD34', 'CD3G', 'CD44')
deepblue_select_expressions(
    expression_type="gene",
    sample_ids="s10205",
    identifiers = genes_names,
    gene_model = "gencode v23")