ARIEvolution: Plot the evolution of the pairwise ARIs as merging happens

In Dune: Improving replicability in single-cell RNA-Seq cell type discovery

Description

Animated version of plotARIs

Usage

ARIEvolution(
  merger,
  unclustered = NULL,
  values = TRUE,
  numericalLabels = FALSE,
  state_length = 1
)

Arguments

merger	the result from having run Dune on the dataset
unclustered	The value assigned to unclustered cells. Default to NULL
values	Whether to also display the ARI values. Default to TRUE.
numericalLabels	Whether labels are numerical values. Default to FALSE.
state_length	Time between steps. Default to 1. See transition_states for details.

Details

See plotARIs and animate.

Value

a gganim object

Examples

## Not run: 
  data("clusMat", package = "Dune")
  merger <- Dune(clusMat = clusMat)
  ARIEvolution(merger)
## End(Not run)

Dune documentation built on Nov. 8, 2020, 7:55 p.m.