ARIs: ARI Matrix

In Dune: Improving replicability in single-cell RNA-Seq cell type discovery

Description

ARI Matrix

Usage

ARIs(clusMat, unclustered = NULL)

Arguments

clusMat	The clustering matrix with a row per cell and a column per clustering label type
unclustered	The value assigned to unclustered cells. Default to NULL

Details

In the ARI matrix where each cell i,j is the adjusted Rand Index between columns i and j of the original clusMat. If unclustered is not NULL, the cells which have been assigned to the unclustered cluster will not be counted towards computing the ARI.

Value

The ARI matrix

Examples

data("clusMat", package = "Dune")
ARIs(clusMat)

Dune documentation built on Nov. 8, 2020, 7:55 p.m.