whenToStop: When to Stop
In Dune: Improving replicability in single-cell RNA-Seq cell type discovery
Description
Usage
Arguments
Details
Value
Examples
Description
When to Stop
Usage
1
whenToStop(merger, p)
Arguments
merger
the result from having run Dune
on the dataset
p
A value between 0 and 1. We stop when the mean ARI has improved by p
of the final total improvement. Default to 1 (i.e running the full merging).
Details
The Dune process improves the mean ARI. This return
the first merging step after which the mean ARI has been improved by p of the
total. Setting p = 1 just return the number of merges.
Value
An integer giving the step where to stop.
Examples
1
2
3
data("clusMat", package = "Dune")
merger <- Dune(clusMat = clusMat)
whenToStop(merger, p = .5)
Dune documentation built on Nov. 8, 2020, 7:55 p.m.
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Description Usage Arguments Details Value Examples
Description
When to Stop
Usage
1 | whenToStop(merger, p)
|
Arguments
merger |
the result from having run |
p |
A value between 0 and 1. We stop when the mean ARI has improved by p of the final total improvement. Default to 1 (i.e running the full merging). |
Details
The Dune process improves the mean ARI. This return
the first merging step after which the mean ARI has been improved by p of the
total. Setting p = 1 just return the number of merges.
Value
An integer giving the step where to stop.
Examples
1 2 3 | data("clusMat", package = "Dune")
merger <- Dune(clusMat = clusMat)
whenToStop(merger, p = .5)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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