clusterConversion: clusterConversion

In Dune: Improving replicability in single-cell RNA-Seq cell type discovery

Description

Find the conversion between the old cluster and the final clusters

Usage

clusterConversion(merger, p = 1, n_steps = NULL)

Arguments

merger	the result from having run Dune on the dataset
p	A value between 0 and 1. We stop when the mean ARI has improved by p of the final total improvement. Default to 1 (i.e running the full merging).
n_steps	Alternatively, you can specifiy the number of merging steps to do before stopping.

Value

A list containing a matrix per clustering method, with a column for the old labels and a column for the new labels.

Examples

data("clusMat", package = "Dune")
merger <- Dune(clusMat = clusMat)
clusterConversion(merger)[[2]]

Dune documentation built on Nov. 8, 2020, 7:55 p.m.