Description Usage Arguments Value Examples
Extract the initial and final conditions from a table.
1 2 | extract_working_sets(first_my_data, replicate_count1,
replicate_count2)
|
first_my_data |
A table to translate. The columns in the table should be as follows:
|
replicate_count1 |
the number of columns (replicates) corresponding to initial conditions. |
replicate_count2 |
the number of columns (replicates) corresponding to final conditions. |
a list containing the following:
probes — the set of probes.
initial — a data set of replicates corresponding to initial conditions.
final — a data set of replicates corresponding to final conditions.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | # read in the EcoliMutMA sample data from the package
data(EcoliMutMA, package="ELBOW")
csv_data <- EcoliMutMA
# - OR - Read in a CSV file (uncomment - remove the #'s
# - from the line below and replace 'filename' with
# the CSV file's filename)
# csv_data <- read.csv(filename)
# set the number of initial and final condition replicates both to three
init_count <- 3
final_count <- 3
# Parse the probes, intial conditions and final conditions
# out of the CSV file. Please see: extract_working_sets
# for more information.
#
# init_count should be the number of columns associated with
# the initial conditions of the experiment.
# final_count should be the number of columns associated with
# the final conditions of the experiment.
working_sets <- extract_working_sets(csv_data, init_count, final_count)
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