Pre-processed Yeast sample RNA-seq data
Pre-processed Yeast sample RNA-seq data, obtained from the website: http://cgrlucb.wikispaces.com/Spring+2012+DESeq+Tutorial
For more information, please contact the author of the webpage.
The content from the tutorial's webpage is licensed as follows: Contributions to http://cgrlucb.wikispaces.com/ are licensed under a Creative Commons Attribution Share-Alike 3.0 License. Creative Commons Attribution Share-Alike 3.0 License.
An 8 column table defined as such:
id — the Gene ID reprented by the row
baseMean — mean estimated from both conditions (with normalization by size factors)
baseMeanA — mean estimated from the first condition specified as an argument to nbinomTest (in this case, “M”)
baseMeanB — mean estimated from the second condition (in this case, “WE”)
foldChange — ratio of the estimated means
log2FoldChange — log2 of the ratio
pval — uncorrected p-value from the negative binomial test
padj — p-value adjusted for multiple testing using Benjamini-Hochberg to estimate the false discovery rate
resVarA — dispersion estimated from the first condition
resVarB — dispersion estimated from the second condition
Lee, H. “Spring 2012 DESeq Tutorial.” http://cgrlucb.wikispaces.com/Spring+2012+DESeq+Tutorial
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