ENmix
Quality control and analysis tools for Illumina DNA methylation BeadChip

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getmeth: Create a methDataSet

getmeth: Create a methDataSet
In ENmix: Quality control and analysis tools for Illumina DNA methylation BeadChip

Description Usage Arguments Details Value Author(s) Examples

View source: R/getmeth.R

Description

To create a methDataSet based on a rgDataset

Usage

1
getmeth(rgSet)

Arguments

rgSet

An object of class rgDataSet

Details

CpG annotation information is incorporated in the output methDataSet object, and can be extracted using command rowData().

Value

An object of class methDataSet

Author(s)

Zongli Xu

Examples

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require(minfiData)
path <- file.path(find.package("minfiData"),"extdata")
#based on rgDataset
rgSet <- readidat(path = path,recursive = TRUE)
meth=getmeth(rgSet)
meth
cginfo=rowData(meth)

ENmix documentation built on April 2, 2021, 6 p.m.

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