Files in ENmix
Quality control and analysis tools for Illumina DNA methylation BeadChip

NAMESPACE
DESCRIPTION
tests/runTests.R R/mpreprocess.R R/dupicc.R R/rgDataSet-class.R R/preprocessENmix.R R/QCinfo.R R/methyAge.R R/utils.R R/readmanifest27k.R R/relic.R R/nmode.R R/mage_norm_function.R R/estimateCellProp.R R/plotCtrl.R R/readmanifest.R R/calcdetP.R R/predSex.R R/getCGinfo.R R/oxBS.MLE.R R/getmeth.R R/norm.quantile.R R/pcrplot.R R/bmiq.mc.R R/ctrlsva.R R/readidat.R R/QCfilter.R R/mhtplot.R R/rm.outlier.R R/rcp.R R/methDataSet-class.R R/DMR_finding.R R/ComBat.mc.R R/p.qqplot.R R/multifreqpoly.R man/plotCtrl.Rd man/preprocessENmix.Rd man/readmanifest.Rd man/ComBat.mc.Rd man/bmiq.mc.Rd man/calcdetP.Rd man/ctrlsva.Rd man/getCGinfo.Rd man/multifreqpoly.Rd man/B2M.Rd man/freqpoly.Rd man/methyAge.Rd man/norm.quantile.Rd man/M2B.Rd man/QCinfo.Rd man/mhtplot.Rd man/rgDataSet-class.Rd man/rcp.Rd man/predSex.Rd man/ipdmr.Rd man/mpreprocess.Rd man/oxBS.MLE.Rd man/rm.outlier.Rd man/pcrplot.Rd man/relic.Rd man/getmeth.Rd man/combp.Rd man/estimateCellProp.Rd man/getB.Rd man/dupicc.Rd man/QCfilter.Rd man/methDataSet-class.Rd man/simubed.Rd man/nmode.Rd man/p.qqplot.Rd man/readidat.Rd man/resultsChamp/raw_mdsPlot.pdf man/resultsChamp/raw_densityPlot.pdf
man/resultsChamp/failedSample.txt
man/resultsChamp/raw_SampleCluster.jpg
inst/CITATION
inst/mage_ref.RData
inst/oxBS.MLE.RData
inst/NEWS.Rd
inst/unitTests/test_enmix.R
inst/unitTests/testDigests.rda
inst/testData/testData.R
inst/testData/testData.out
inst/doc/ENmix.pdf inst/doc/ENmix.R
inst/doc/ENmix.Rnw
build/vignette.rds
vignettes/ENmix.Rnw
vignettes/fig/pcr_diag.jpg
vignettes/fig/NEGATIVE.jpg
vignettes/fig/NON-POLYMORPHIC.jpg
vignettes/fig/NORM_ACGT.jpg
vignettes/fig/BISULFITE_CONVERSION_I.jpg
vignettes/fig/dist.jpg
ENmix documentation built on Nov. 14, 2020, 2:02 a.m.