Description Usage Arguments Author(s) Examples
P value manhattan plot
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probe |
probe name |
chr |
Chromosome, 1,2,...,22,X,Y |
pos |
Chromosome positions |
p |
P values |
color |
Color scheme of manhattan plot, "bg" indicate "black and gray" |
sigthre |
P value of significant threshold line |
sigthre2 |
P value of second significant threshold line |
threlty |
Threshold line type, default is c(2,1) |
markprobe |
A list of CpGs to be marked out |
markcolor |
Color code for marked probe, "red" in default |
outf |
figure file name, default "mht" |
outfmt |
Output figure file format, "jpg" or "eps" |
reducesize |
A positive interger, larger the value, smaller the eps file size. Smaller file size is achieved by skipping some densely packed data points |
Zongli Xu
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