U.hypergeom: An internal S4 class for the user data of the hypergeometric...
In FELLA: Interpretation and enrichment for metabolomics data
Description
An internal S4 class for the user data
of the hypergeometric over representation
analysis
Slots
validLogical value; is the analysis valid?
pvaluesNamed numeric vector with p-values
pathhitsNumeric named vector with
the quantities "sample_success"
for the hypergeometric distribution (#affected in path)
pathbackgroundNumeric named vector with
the quantities "total_success"
for the hypergeometric distribution (total in path)
nbackgroundNumeric value, number of compoudns in the background.
Equivalently, number of rows for the hypergeometric binary matrix
ninputNumeric value, number of affected compounds matched to the
rownames
FELLA documentation built on Nov. 8, 2020, 6:57 p.m.
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Description
An internal S4 class for the user data of the hypergeometric over representation analysis
Slots
validLogical value; is the analysis valid?
pvaluesNamed numeric vector with p-values
pathhitsNumeric named vector with the quantities "sample_success" for the hypergeometric distribution (#affected in path)
pathbackgroundNumeric named vector with the quantities "total_success" for the hypergeometric distribution (total in path)
nbackgroundNumeric value, number of compoudns in the background. Equivalently, number of rows for the hypergeometric binary matrix
ninputNumeric value, number of affected compounds matched to the rownames
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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