Files in FELLA

Interpretation and enrichment for metabolomics data

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/input.sample.RData

data/FELLA.sample.RData

R/loadKEGGdata.R R/enrich.R R/plotLegend.R R/runHypergeom.R R/plotGraph.R R/doc-package.R R/AllArguments.R R/runDiffusion.R R/plotBipartite.R R/AllMethods.R R/get-.R R/generateEnzymesTable.R R/doc-data.R R/exportResults.R R/runPagerank.R R/list-.R R/launchApp.R R/generateResultsGraph.R R/buildGraphFromKEGGREST.R R/addGOToGraph.R R/defineCompounds.R R/AllClasses.R R/generateResultsTable.R R/buildDataFromGraph.R R/is-.R

vignettes/shiny4.png

vignettes/bibliography_zebrafish.bib

vignettes/workflow3.eps

vignettes/zebrafish.Rmd

vignettes/bibliography.bib

vignettes/FELLA.Rnw

vignettes/kegggraph.eps

vignettes/shiny1.png

vignettes/PR_contour.eps

vignettes/shiny2.png

vignettes/HD_contour.eps

vignettes/quickstart.Rmd

vignettes/shiny3.png

vignettes/musmusculus.Rmd

vignettes/bibliography_mouse.bib

man/plotBipartite.Rd man/D.pagerank.Rd man/input.sample.Rd man/U.pagerank.Rd man/listApprox.Rd man/plotLegend.Rd man/infere.con2ec.Rd man/sanitise.Rd man/enrich-funs.Rd man/getName.Rd man/listMethods.Rd man/FELLA.USER.Rd man/getPscores.Rd man/D.hypergeom.Rd man/getPvaluesSize.Rd man/FELLA.Rd man/getStatus.Rd man/U.userinput.Rd man/D.diffusion.Rd man/FELLA.DATA.Rd man/largestcc.Rd man/U.diffusion.Rd man/mytriangle.Rd man/getMatrix.Rd man/listInternalDatabases.Rd man/getSums.Rd man/getCom.Rd man/getInput.Rd man/is.FELLA.DATA.Rd man/getExcluded.Rd man/getInfo.Rd man/U.hypergeom.Rd man/is.FELLA.USER.Rd man/FELLA.sample.Rd man/dot-params.Rd man/checkArguments.Rd man/D.keggdata.Rd man/launchApp.Rd man/getBackground.Rd man/data-funs.Rd man/listCategories.Rd man/export-funs.Rd man/getValid.Rd man/getGraph.Rd tests/testthat.R tests/testthat/test-felladataCreation.R tests/testthat/test-databaseCreation.R tests/testthat/test-extractors.R tests/testthat/test-enrich.R

inst/CITATION

inst/doc/quickstart.html

inst/doc/zebrafish.Rmd

inst/doc/FELLA.Rnw

inst/doc/quickstart.R inst/doc/quickstart.Rmd inst/doc/musmusculus.pdf inst/doc/musmusculus.R inst/doc/zebrafish.R inst/doc/musmusculus.Rmd inst/doc/FELLA.pdf inst/doc/zebrafish.pdf inst/doc/FELLA.R inst/shiny/ui.R inst/shiny/server.R inst/shiny/global.R

inst/shiny/www/creb_upc.png

inst/shiny/www/b2slab_small.png

inst/shiny/www/b2slab.png

inst/shiny/examples/input_1_compounds.list

inst/shiny/examples/input_3_metaboanalyst.list

inst/shiny/examples/input_2_compounds.list

inst/shiny/examples/sampleTex/samplePR.log

inst/shiny/examples/sampleTex/samplePR.aux

inst/shiny/examples/sampleTex/sample.tex

inst/shiny/examples/sampleTex/sample.log

inst/shiny/examples/sampleTex/sample.aux

inst/shiny/examples/sampleTex/samplePR.tex

inst/script/citations_formatted.txt

inst/script/generateSampleData.R inst/script/reindentRd.R

FELLA documentation built on Nov. 8, 2020, 6:57 p.m.