tests/testthat/test-getCallSet.R

In GA4GHclient: A Bioconductor package for accessing GA4GH API data servers

context("getCallSet")

test_that("getCallSet works", {
    skip_on_bioc()
    host <- "http://1kgenomes.ga4gh.org/"
    datasetId <- searchDatasets(host, nrows = 1)$id
    variantSetId <- searchVariantSets(host, datasetId, nrows = 1)$id
    callSetId <- searchCallSets(host, variantSetId, nrows = 1)$id
    callSet <- getCallSet(host, callSetId)
    expect_s4_class(callSet, "DataFrame")
    expect_equal(dim(callSet), c(1, 4))
})