LockeData: Gene expression time series generated with ODE model

In GRENITS: Gene Regulatory Network Inference Using Time Series

Description

This data set was generated using a circadian clock regulatory network ODE model. The data was simulated using COPASI, subsampled to produce hourly data and after this the log was calculated.

Usage

data(Athaliana_ODE)

Format

A matrix containing genes in rows and (1h) time points in columns.

References

Hoops, S., Sahle, S., Gauges, R., Lee, C., Pahle, J., Simus, N., Singhal, M., Xu, L., Mendes, P. and Kummer, U. (2006) COPASI a COmplex PAthway SImulator. Bioinformatics, 22, 3067-3074.

Locke, J.C.W., Kozma-Bognar, L., Gould, P.D., Feher, B., Kevei, E., Nagy, F., Turner, M.S., Hall, A. and Millar, A.J. (2006) Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. Molecular Systems Biology

GRENITS documentation built on Nov. 8, 2020, 6:47 p.m.