LockeDataError: Gene expression time series generated with ODE model with...
In GRENITS: Gene Regulatory Network Inference Using Time Series
Description
Usage
Format
References
Description
This data set was generated using a circadian clock regulatory network ODE model after which noise was added.
The data was simulated using COPASI, subsampled to produce hourly data and after this the log was caluclated.
Further to this, four replicates were produced by adding student noise.
Usage
1
Format
A matrix containing genes in rows and (1h) time points in columns. The four replicates are appended (columns)
References
Hoops, S., Sahle, S., Gauges, R., Lee, C., Pahle, J., Simus, N., Singhal, M., Xu, L., Mendes, P. and Kummer, U.
(2006) COPASI a COmplex PAthway SImulator. Bioinformatics, 22, 3067-3074.
Locke, J.C.W., Kozma-Bognar, L., Gould, P.D., Feher, B., Kevei, E., Nagy, F., Turner, M.S., Hall, A. and Millar, A.J. (2006)
Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. Molecular Systems Biology
GRENITS documentation built on Nov. 8, 2020, 6:47 p.m.
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Description Usage Format References
Description
This data set was generated using a circadian clock regulatory network ODE model after which noise was added. The data was simulated using COPASI, subsampled to produce hourly data and after this the log was caluclated. Further to this, four replicates were produced by adding student noise.
Usage
1 |
Format
A matrix containing genes in rows and (1h) time points in columns. The four replicates are appended (columns)
References
Hoops, S., Sahle, S., Gauges, R., Lee, C., Pahle, J., Simus, N., Singhal, M., Xu, L., Mendes, P. and Kummer, U. (2006) COPASI a COmplex PAthway SImulator. Bioinformatics, 22, 3067-3074.
Locke, J.C.W., Kozma-Bognar, L., Gould, P.D., Feher, B., Kevei, E., Nagy, F., Turner, M.S., Hall, A. and Millar, A.J. (2006) Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. Molecular Systems Biology
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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