Regions of SNP-PC correlation to filter for Principal Component Analysis
Base positions for the LCT (2q21), HLA (including MHC), and inversion (8p23, 17q21.31) regions from the GRCh36/hg18, GRCh37/hg19 and GRCh38/hg38 genome genome builds.
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A data.frame with the following columns.
starting base position of region
ending base position of region
description of the region
These regions result in high SNP-PC
correlation if they are included in Principal Component Analysis
pcaSnpFilters datasets can be used to filter SNPs prior to running PCA
to avoid correlations.
UCSC genome browser (http://genome.ucsc.edu).
Novembre, John et al. (2008), Genes mirror geography within Europe. Nature, 456: 98-101. doi:10.1038/nature07331
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