pseudoautosomal: Pseudoautosomal region base positions

Description Usage Format Details Source References Examples

Description

Pseudoautosomal region (XTR, PAR1, PAR2) base positions for the X and Y chromsosomes from the GRCh36/hg18, GRCh37/hg19 and GRCh38/hg38 genome builds.

Usage

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Format

A data.frame with the following columns.

chrom

chromosome (X or Y)

region

region (XTR, PAR1, or PAR2)

start.base

starting base position of region

end.base

ending base position of region

Details

The XTR region on X is defined as DXS1217 to DXS3. The XTR region on Y is defined as SY20 to DXYS1.

Source

hg18 and hg19: UCSC genome browser (http://genome.ucsc.edu)

hg38: Genome Reference Consortium (http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/).

References

Ross, Mark. T. et al. (2005), The DNA sequence of the human X chromosome. Nature, 434: 325-337. doi:10.1038/nature03440

Mumm, S., Molini, B., Terrell, J., Srivastava, A., and Schlessinger, D. (1997), Evolutionary features of the 4-Mb Xq21.3 XY homology region revealed by a map at 60-kb resolution. Genome Res. 7: 307-314.

Examples

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