Man pages for GenoGAM
A GAM based framework for analysis of ChIP-Seq data

asCoordinatesIRanges to Coordinates
callPeaksCall peaks on a GenoGAM object
computeRegionSignificanceCompute significance for given regions
computeSignificancecomputeSignificance
computeSizeFactorscomputeSizeFactors
Coordinates-classCoordinates class
fitGenoGAMgenogam
GenoGAMGenoGAM: A package providing a framework to analyse ChIP-Seq...
GenoGAM-classGenoGAM class
GenoGAMDataSet-classGenoGAMDataSet
GenoGAMDataSetList-classGenoGAMDataSetList
GenoGAMDataSetList-metricsComputing metrics
GenoGAMDataSetList-subsettingSubset method for GenoGAMDataSetList
GenoGAMDataSet-metricsComputing metrics
GenoGAMDataSet-subsettingSubset methods for GenoGAMDataSet
GenoGAMFamily-classGenoGAMFamily class
GenoGAMList-classGenoGAMList class
GenoGAMList-subsettingSubset method for GenoGAMList
GenoGAMSettings-classGenoGAMSettings
makeTestGenoGAMMake an example /codeGenoGAM
makeTestGenoGAMDataSetMake an example /codeGenoGAMDataSet
makeTestGenoGAMDataSetListMake an example /codeGenoGAMDataSet
makeTestGenoGAMListMake an example /codeGenoGAMList
plotGenoGAMThe pot function for a GenoGAM object
readDataRead Data function
writeToBEDFileWrite peaks to BED6+3/4 format
GenoGAM documentation built on Dec. 7, 2018, 6 p.m.