computeSizeFactors: computeSizeFactors

Description Usage Arguments Value Author(s) Examples

View source: R/sf.R

Description

The function computes the size factors for given factor groups based on the DESeq2 package.

Usage

1
computeSizeFactors(ggd, factorGroups = NULL)

Arguments

ggd

A GenoGAMDataSet object.

factorGroups

A list of grouped IDs (same as the colnames of the GenoGAMDataSet object). Each element of the list represents a group of samples within which size factors are computed. If NULL all samples are regarded to belong to one group. Size factors are not computed between groups.

Value

An updated GenoGAMDataSet object.

Author(s)

Georg Stricker georg.stricker@in.tum.de

Examples

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GenoGAM documentation built on May 31, 2017, 2:27 p.m.