GenoGAMDataSetList-metrics: Computing metrics

Description Usage Arguments Value Author(s) Examples

Description

Computing metrics on each tile of the GenoGAMDataSetList object. All metrics from the Summary generics group, as well as mean, var, sd, median, mad and IQR are supported.

Usage

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## S4 method for signature 'GenoGAMDataSetList'
Summary(x, ..., na.rm = FALSE)

Arguments

x

A GenoGAMDataSetList object

...

Additional arguments

na.rm

Should NAs be dropped. Otherwise the result is NA

Value

A matrix with the specified metric computed per tile per column of the assay data.

Author(s)

Georg Stricker [email protected]

Examples

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ggd <- makeTestGenoGAMDataSetList()
sum(ggd)
min(ggd)
max(ggd)
mean(ggd)
var(ggd)
sd(ggd)
median(ggd)
mad(ggd)
IQR(ggd)

GenoGAM documentation built on Dec. 7, 2018, 6 p.m.