GenomicAlignments: Representation and manipulation of short genomic alignments

Provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

README.md An Introduction to the GenomicAlignments Package Counting reads with summarizeOverlaps Overlap encodings Working with aligned nucleotides

Vignettes Man pages API and functions Files

Package details
Author	Hervé Pagès, Valerie Obenchain, Martin Morgan
Bioconductor views	Alignment Coverage DataImport Genetics ImmunoOncology Infrastructure RNASeq SNP Sequencing
Maintainer	Bioconductor Package Maintainer <maintainer@bioconductor.org>
License	Artistic-2.0
Version	1.26.0
URL	https://bioconductor.org/packages/GenomicAlignments
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("GenomicAlignments")`