Man pages for GreyListChIP
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
| calcThreshold-methods | Calculate Read Count Threshold |
| ce10.blacklist | A 'GRanges' object representing ENCODE signal artefact or... |
| countReads-methods | Count reads from a 'BamFile' |
| getKaryotype-methods | Replace the karyotype of a 'GreyList' object |
| greyList | A sample 'GreyList' object for use in examples. |
| greyListBS | Construct a grey list with default arguments |
| GreyList-class | '"GreyList"' Objects |
| loadKaryotype-methods | Load a karyotype from a file |
| makeGreyList-methods | Generate a grey list from a 'GreyList' object |
| setRegions-methods | Replace the set of regions of a 'GreyList' object |
