hlaAASeqClass: Class of HLA Amino Acid Sequence Type

Description Value Author(s) See Also

Description

The definition of a class for HLA protein amino acid sequences.

Value

There are following components:

locus

HLA locus

pos.start

the starting position in basepair

pos.end

the end position in basepair

value

a data frame

assembly

the human genome reference, such like "hg19"

start.position

the start position

reference

reference sequence

The component value includes:

sample.id

sample ID

allele1

amino acid or nucleotide sequence

allele2

amino acid or nucleotide sequence

P1, ..., Pn

if applicable, a matrix of posterior probability, row – sample, column – position of amino acid

Author(s)

Xiuwen Zheng

See Also

hlaConvSequence


HIBAG documentation built on March 24, 2021, 6 p.m.