Description Value Author(s) See Also
The definition of a class for HLA protein amino acid sequences.
There are following components:
locus |
HLA locus |
pos.start |
the starting position in basepair |
pos.end |
the end position in basepair |
value |
a data frame |
assembly |
the human genome reference, such like "hg19" |
start.position |
the start position |
reference |
reference sequence |
The component value
includes:
sample.id |
sample ID |
allele1 |
amino acid or nucleotide sequence |
allele2 |
amino acid or nucleotide sequence |
P1, ..., Pn |
if applicable, a matrix of posterior probability, row – sample, column – position of amino acid |
Xiuwen Zheng
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