hlaAlleleClass: Class of HLA/KIR Type

In HIBAG: HLA Genotype Imputation with Attribute Bagging

Description

The definition of a class for HLA/KIR types, returned from hlaAllele.

Value

There are following components:

locus	HLA/KIR locus
pos.start	the starting position in basepair
pos.end	the end position in basepair
value	a data frame
assembly	the human genome reference, such like "hg19"
postprob	if applicable, a matrix of all posterior probabilities

~

The component value includes:

sample.id	sample ID
allele1	HLA allele
allele2	HLA allele
prob	if applicable, the posterior probability

Author(s)

Xiuwen Zheng

See Also

hlaAllele

HIBAG documentation built on March 24, 2021, 6 p.m.