API for HiLDA
Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocation
| Global functions | |
|---|---|
| EstimatedParameters-class | Man page |
| MetaInformation-class | Man page |
| MutationFeatureData-class | Man page |
| PMSboundary | Man page Source code |
| boundaryTurbo_F | Man page Source code |
| boundaryTurbo_Q | Man page Source code |
| calcPMSLikelihood | Man page Source code |
| convertFromTurbo_F | Man page Source code |
| convertFromTurbo_Q | Man page Source code |
| convertToTurbo_F | Man page Source code |
| convertToTurbo_Q | Man page Source code |
| getLogLikelihoodC | Man page Source code |
| getMutationFeatureVector | Man page Source code |
| hildaBarplot | Man page Source code |
| hildaDiffPlot | Man page Source code |
| hildaGlobalResult | Man page Source code |
| hildaLocalResult | Man page Source code |
| hildaPlotSignature | Man page Source code |
| hildaReadMPFile | Man page Source code |
| hildaRhat | Man page Source code |
| hildaTest | Man page Source code |
| mySquareEM | Man page Source code |
| pmBarplot | Man page Source code |
| pmMultiBarplot | Man page Source code |
| pmPlotSignature | Man page Source code |
| pmgetSignature | Man page Source code |
| updateMstepFQC | Man page Source code |
| updatePMSParam | Man page Source code |
| updateTheta_NormalizedC | Man page Source code |
| visPMS | Man page Source code |
