EstimatedParameters-class: An S4 class representing the estimated parameters

Description Slots

Description

An S4 class representing the estimated parameters

Slots

sampleList

a list of sample names observed in the input mutation data

signatureNum

the number of mutation signatures specified at the time of estimation

isBackGround

the flag showing whether the background signature data is used or not.

backGroundProb

the background signatures

signatureFeatureDistribution

estimated parameters for mutation signatures

sampleSignatureDistribution

estimated parameters for memberships of mutation signatures for each sample

loglikelihood

the log-likelihood value for the estimated parameters


HiLDA documentation built on Nov. 8, 2020, 11:09 p.m.