hildaDiffPlot: Read the raw mutation data with the mutation feature vector...

Description Usage Arguments Value Examples

View source: R/hilda_plot.R

Description

Read the raw mutation data with the mutation feature vector format, estimate and plot both mutation signatures and their fractions

Usage

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hildaDiffPlot(inputG, hildaResult, sigOrder = NULL, charSize = 3)

Arguments

inputG

a MutationFeatureData S4 class output by the pmsignature.

hildaResult

a rjags class output by HiLDA.

sigOrder

the order of signatures if needed (default: NULL).

charSize

the size of the character on the signature plot (default: 3)

Value

a list of the signature plot and the mean difference plot.

Examples

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load(system.file("extdata/sample.rdata", package="HiLDA"))
inputFile <- system.file("extdata/hildaLocal.rdata", package="HiLDA")
hildaLocal <- readRDS(inputFile)

hildaDiffPlot(G, hildaLocal)

HiLDA documentation built on Nov. 8, 2020, 11:09 p.m.